WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00131647 Gene Name  Cjp-xrn-1
Sequence Name  ? CJA12443 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable 5'-3' exonuclease activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process. Is an ortholog of C. elegans xrn-1. In C. elegans, xrn-1 is involved in determination of adult lifespan and negative regulation of cytoplasmic mRNA processing body assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA12443.1 CJA12443.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA12443 CJA12443   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA05615, GCCTCCGCCCGTGAAAAAATTGGTGAACAATGACGCTTCTACGCACTTAGAATCTGAGAA, WBGene00124819   Expr1090796 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cjp-xrn-1, GTGCCCATTGGAATGCCTGTTTCGCCCCAACAAATGCACCAAATACACCTCATGCAAATG, WBGene00131647   Expr1083070 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region