WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00129768 Gene Name  CJA10564
Sequence Name  ? CJA10564 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Is an ortholog of C. elegans hmr-1. In C. elegans, hmr-1 is involved in several processes, including cell-cell adhesion mediated by cadherin; cytoskeleton organization; and gastrulation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA10564a.1 CJA10564a.1   [unknown]
Transcript:CJA10564c.1 CJA10564c.1   [unknown]
Transcript:CJA10564b.1 CJA10564b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA10564c CJA10564c   [unknown]
CDS:CJA10564b CJA10564b   [unknown]
CDS:CJA10564a CJA10564a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-hmr-1, AAAACCGGACGACGAGTGGAACTCGAAGATTAAGGATTTGGAGGCGGATCAGAACGCGGC, WBGene00129768   Expr1070714 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  located_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  located_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region