WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00124771 Gene Name  Cjp-vps-50
Sequence Name  ? CJA05567 Organism  Caenorhabditis japonica
Automated Description  Predicted to be involved in endocytic recycling and retrograde transport, endosome to Golgi. Predicted to be part of EARP complex. Is an ortholog of C. elegans vps-50. In C. elegans, vps-50 is involved in positive regulation of dense core granule transport and positive regulation of locomotion involved in locomotory behavior. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA05567.1 CJA05567.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA05567 CJA05567   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CJA05567, AAAACAACTGTCAAGCCTGCTCGGCGCAGCCGCACACGTTAGCAAAAAGGCGCGCGTGCG, WBGene00124771   Expr1075569 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region