WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00123434 Gene Name  CJA04228
Sequence Name  ? CJA04228 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable ATP binding activity; DNA binding activity; and DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity. Predicted to be involved in DNA metabolic process and regulation of DNA-templated transcription. Predicted to be located in chromosome and nucleus. Is an ortholog of C. elegans spo-11 and swsn-4. In C. elegans, spo-11 is involved in meiotic DNA double-strand break processing. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA04228.1 CJA04228.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA04228 CJA04228   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-spo-11, AACTCGAGTTGGAATCGATAACAATGTGCGGCAAAGAGTTCATGTCGCGGTATTTGATTG, WBGene00123434   Expr1086460 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA01850, ATCTCGTCCATGGAAGAGCAAGGACTTCAGAATGATCATCGTCACGCAAAAGCAGTGCTT, WBGene00121054   Expr1082275 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  enables
  located_in
  involved_in
  located_in

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  enables
  located_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region