WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00123184 Gene Name  Cjp-clh-6
Sequence Name  ? CJA03980 Organism  Caenorhabditis japonica
Automated Description  Predicted to enable chloride transmembrane transporter activity. Predicted to be involved in chloride transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans clh-6. In C. elegans, clh-6 is involved in lysosomal protein catabolic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis japonica 281687

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CJA03980b.1 CJA03980b.1   [unknown]
Transcript:CJA03980a.1 CJA03980a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CJA03980b CJA03980b   [unknown]
CDS:CJA03980a CJA03980a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cjp-clh-6, GAAGGGAGAATATTCGGCAGTTGCGAGTCTATTCTTCCAAAATCCGGAGGAAAGTGTGAG, WBGene00123184   Expr1079046 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CJA28852, TACGGTAGACTCAAAGGATACATTCTTCGCTCACAGCTTTTCAAGCTTCTGGAAAACCGA, WBGene00184426   Expr1078982 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  located_in
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  located_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region