WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00109569 Gene Name  Ppa-lin-39
Sequence Name  ? PPA20015 Brief Description  Ppa-lin-39 encodes a homeodomain protein homologous to the Deformed and Sex combs reduced family of homeodomain proteins; Ppa-lin-39 is required for specification of mid-body region cell fates, including those of the VC neurons and the vulval precursor cells (VPCs), during postembryonic development; P(5-8).p in the central body region die of programmed cell death in Ppa-lin-39 mutants and thereby, adopt the fate of the anterior and posterior lineage homologs P(1-4,9-11).p; Cel-lin-39 and Ppa-lin-39 provide positional information to the VPCs in a similar manner; Ppa-lin-39, in contrast to Cel-lin-39, is not required as a transcription factor in response to the inductive signal for vulva formation.
Organism  Pristionchus pacificus Automated Description  Predicted to enable DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans lin-39. In C. elegans, lin-39 is involved in several processes, including positive regulation of DNA-templated transcription; positive regulation of developmental process; and regulation of cell division.
Biotype  SO:0001217 Genetic Position  :±
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA20015.1 PPA20015.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA20015 PPA20015   [unknown]

0 RNAi Result

2 Allele

Public Name
tu2
tu29

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

0 Expression Patterns

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  enables
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  enables
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region