WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00094449 Gene Name  Ppa-mel-26
Sequence Name  ? PPA04895 Organism  Pristionchus pacificus
Automated Description  Enriched in intestine based on RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; BTB/POZ domain; TRAF-like; SKP1/BTB/POZ domain superfamily; and Nucleotidyltransferase superfamily. Is an ortholog of C. elegans mel-26. In C. elegans, mel-26 is involved in several processes, including cytoskeleton organization; positive regulation of TORC1 signaling; and regulation of mitotic spindle elongation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Pristionchus pacificus 54126

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:PPA04895.1 PPA04895.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:PPA04895 PPA04895   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Protein that contains phosphorylation site according to nano-HPLC and mass spectrometry on enriched phosphopeptides. The database search results were parsed by MaxQuant to assemble protein groups, peptides, and phosphorylation sites at a false discovery rate of 1%. All phosphorylation events having a reported localization probability of at least 0.75 were considered as localized (assigned to a specific amino acid). WBPaper00041472:Phosphorylated_protein
  P.pacificus genes enriched in intestine. Cuffdiff (version v2.0.1) WBPaper00049334:PE_intestine_enriched
Yeast culture: C.curvatus Transcripts that showed significantly decreased expression after fed with yeast culture C.curvatus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.curvatus_vs_OP50_downregulated
Yeast culture: C.albidus Transcripts that showed significantly increased expression after fed with yeast culture C.albidus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.albidus_vs_OP50_upregulated
Yeast culture: C.albidus Transcripts that showed significantly decreased expression after fed with yeast culture C.albidus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.albidus_vs_OP50_downregulated
Yeast culture: C.curvatus Transcripts that showed significantly increased expression after fed with yeast culture C.curvatus, comparing to fed with OP50. Cuffdiff (version 2.0.1) WBPaper00050265:C.curvatus_vs_OP50_upregulated

0 Expression Patterns

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region