WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00086675 Gene Name  Cbr-kcnl-2
Sequence Name  ? CBG25261 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans kcnl-2. In C. elegans, kcnl-2 is involved in positive regulation of egg-laying behavior. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG25261a.1 CBG25261a.1   [unknown]
Transcript:CBG25261e.1 CBG25261e.1   [unknown]
Transcript:CBG25261d.1 CBG25261d.1   [unknown]
Transcript:CBG25261c.1 CBG25261c.1   [unknown]
Transcript:CBG25261b.1 CBG25261b.1   [unknown]
Transcript:CBG25261f.1 CBG25261f.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG25261a CBG25261a   [unknown]
CDS:CBG25261c CBG25261c   [unknown]
CDS:CBG25261b CBG25261b   [unknown]
CDS:CBG25261e CBG25261e   [unknown]
CDS:CBG25261d CBG25261d   [unknown]
CDS:CBG25261f CBG25261f   [unknown]

0 RNAi Result

23 Allele

Public Name
WBVar00109037
WBVar00109038
WBVar00109039
WBVar00109047
WBVar00109048
WBVar00109049
WBVar00109040
WBVar00109041
WBVar00109042
WBVar00109043
WBVar00109044
WBVar00109045
WBVar00109046
WBVar00109058
WBVar00109059
WBVar00109050
WBVar00109051
WBVar00109052
WBVar00109053
WBVar00109054
WBVar00109055
WBVar00109056
WBVar00109057

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG04155, TTCTTTCCAACTCATCAGACACTACATCGAATCCCCACCCAAGTGTTACCTGGAGAACAA, WBGene00026884   Expr1060308 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG25262, ATCGTCCATCAGCATCCAGTGAAGATTTATTTGCCAGTTGTAATGATATCGATAATGCGG, WBGene00086676   Expr1051486 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG04158, ATGTTCATTCAACACAGGAGGGTCTTTCCCTTCGTATAACTGCAATTGAGCATCAATTGA, WBGene00026885   Expr1055549 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  located_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region