Genomics
1 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:Y27F2A.10.1 | Y27F2A.10.1 |
765
 |
II: 3171468-3172276 |
Other
1 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:Y27F2A.10 | Y27F2A.10 |
765
|
II: 3171468-3171664 |
31 Allele
| Public Name |
|---|
| gk964317 |
| gk963801 |
| WBVar02122780 |
| WBVar02124390 |
| WBVar02122098 |
| WBVar02122355 |
| gk962754 |
| WBVar02124872 |
| WBVar02121545 |
| WBVar02120617 |
| WBVar02121721 |
| WBVar02120928 |
| WBVar01790867 |
| gk744529 |
| WBVar01790868 |
| gk471695 |
| gk799079 |
| gk460825 |
| gk344456 |
| WBVar02123185 |
| gk765175 |
| gk363441 |
| gk743367 |
| WBVar02120455 |
| WBVar00168677 |
| WBVar00168678 |
| gk137772 |
| gk137771 |
| WBVar00219505 |
| WBVar02121369 |
1 Chromosome Location
|
Feature . Primary Identifier |
Start | End | Strand |
|---|---|---|---|
| WBGene00045303 | 3171468 | 3172276 | -1 |
3 Data Sets
| Name | URL |
|---|---|
| WormBaseAcedbConverter | |
| GO Annotation data set | |
| C. elegans genomic annotations (GFF3 Gene) |
1 Downstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrII_3170901..3171467 | 567 | II: 3170901-3171467 | Caenorhabditis elegans |
3 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly decreased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage. | tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05. | WBPaper00062520:qui-1(db104)_downregulated | |
| Fungi infection: Fusarium oxysporum | Transcripts that showed significantly altered expression after infected by fungi Fusarium oxysporum from 0 t0 48 hours. | The Benjamini and Hochberg approach was used to adjust the resulting P-values for controlling the false-discovery rate. The transcripts having a false-discovery rate of < 0.05 were considered as differentially expressed. | WBPaper00053368:F.oxysporum_regulated |
| Genes that are up-regulated in wild-type N2 larvae compared to elt-2(ca15);elt-7(tm840) larvae. | RNA-seq count data were filtered for detected genes (> 10 counts across all samples) and analyzed using DESeq. 2 with Cook's cutoff filtering set to FALSE. Genes were counted as differentially expressed if they registered a Benjamini-Hochberg corrected p-value less than 0.05 and a log2-fold change greater than 1.2 between any pair-wise conditional comparison. | WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated |
2 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| Expr1025507 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | |||
| Expr1159284 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/hashimshony2015 |
1 Upstream Intergenic Region
| WormBase ID | Name | Sequence Name | Length (nt) | Chromosome Location | Organism |
|---|---|---|---|---|---|
| intergenic_region_chrII_3172277..3177962 | 5686 | II: 3172277-3177962 | Caenorhabditis elegans |
