WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00042441 Gene Name  Cbr-snt-6
Sequence Name  ? CBG24293 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans snt-6. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG24293.1 CBG24293.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG24293 CBG24293   [unknown]

0 RNAi Result

21 Allele

Public Name
WBVar00140224
WBVar00140225
WBVar00140223
WBVar00140228
WBVar00140229
WBVar00140226
WBVar00140227
WBVar00140232
WBVar00140233
WBVar00140230
WBVar00140231
WBVar00140236
WBVar00140237
WBVar00140234
WBVar00140235
WBVar00140240
WBVar00140241
WBVar00140238
WBVar00140239
WBVar00140242
WBVar00140243

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-snt-6, CTCCAAGACCCCGGACAAAGTGAGCGCAGCAAAGTGCATCGAAGGAATCTCAATCCAACG, WBGene00042441   Expr1055492 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region