WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041980 Gene Name  CBG23695
Sequence Name  ? CBG23695 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be involved in DNA-templated transcription and negative regulation of vulval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG23695c.1 CBG23695c.1   [unknown]
Transcript:CBG23695b.1 CBG23695b.1   [unknown]
Transcript:CBG23695a.1 CBG23695a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG23695c CBG23695c   [unknown]
CDS:CBG23695a CBG23695a   [unknown]
CDS:CBG23695b CBG23695b   [unknown]

0 RNAi Result

1 Allele

Public Name
WBVar00049004

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG23695, GATGGGCGATTTGGTGAATATTGCGAAGAATTTCGATTCGGATTTCACAGAAGATCACTT, WBGene00041980   Expr1052609 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  involved_in
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region