WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041700 Gene Name  Cbr-sma-1
Sequence Name  ? CBG23326 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable phospholipid binding activity. Is an ortholog of C. elegans sma-1. In C. elegans, sma-1 is involved in several processes, including nematode pharyngeal gland morphogenesis; nematode pharynx development; and regulation of anatomical structure size. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG23326b.1 CBG23326b.1   [unknown]
Transcript:CBG23326a.1 CBG23326a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG23326b CBG23326b   [unknown]
CDS:CBG23326a CBG23326a   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00132972
WBVar00027144
WBVar00000745

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sma-1, AACGCGGAAAGGACATGATTCGTCAACGTCATTTCGCTTCTGGACACATCCAAAAGATTC, WBGene00041700   Expr1056753 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region