WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041222 Gene Name  Cbr-ksr-1
Sequence Name  ? CBG22727 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable protein kinase activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans ksr-1. In C. elegans, ksr-1 is involved in several processes, including defense response to Gram-positive bacterium; positive regulation of Ras protein signal transduction; and positive regulation of vulval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22727.1 CBG22727.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22727 CBG22727   [unknown]

0 RNAi Result

20 Allele

Public Name
WBVar00139978
WBVar00139976
WBVar00139977
WBVar00007514
WBVar00007549
WBVar00007519
WBVar00007554
WBVar00007524
WBVar00007559
WBVar00007529
WBVar00132363
WBVar00007564
WBVar00007534
WBVar00007504
WBVar00007569
WBVar00007539
WBVar00035764
WBVar00007509
WBVar00007574
WBVar00007544

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ksr-1, AACTGACAGCAGTACCCAAAAAGCAACGTGTCAATCGTAGTCCAAGTTTCCCGGTGATGA, WBGene00041222   Expr1069754 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region