WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041184 Gene Name  Cbr-haf-4
Sequence Name  ? CBG22668 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP binding activity; ATP hydrolysis activity; and transmembrane transporter activity. Predicted to be involved in peptide transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans haf-4. In C. elegans, haf-4 is involved in lipid metabolic process and lysosomal transport. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22668.1 CBG22668.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22668 CBG22668   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00132305
WBVar00132308
WBVar00132309
WBVar00132306
WBVar00132307
WBVar00132312
WBVar00132313
WBVar00132310
WBVar00132311
WBVar00132316
WBVar00132317
WBVar00132314
WBVar00132315
WBVar00132318
WBVar00132319
WBVar00034782
WBVar00038309
WBVar00038314
WBVar00038319

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-haf-4, GAAGCCACGTCGGCGTTGGATACGGAATCCGAGCATGTTGTACAAGAAGCGATTTATAAG, WBGene00041184   Expr1058673 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables
  enables
  enables
  enables

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  located_in
  enables
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region