WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041085 Gene Name  Cbr-pat-6
Sequence Name  ? CBG22549 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable actin binding activity. Predicted to be involved in actin cytoskeleton organization and cell adhesion. Is an ortholog of C. elegans pat-6. In C. elegans, pat-6 is involved in several processes, including muscle cell cellular homeostasis; positive regulation of sarcomere organization; and striated muscle cell development. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22549.1 CBG22549.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22549 CBG22549   [unknown]

0 RNAi Result

37 Allele

Public Name
WBVar00131968
WBVar00131969
WBVar00131966
WBVar00131967
WBVar00012349
WBVar00131972
WBVar00131973
WBVar00131970
WBVar00131971
WBVar00012354
WBVar00131976
WBVar00131977
WBVar00131974
WBVar00131975
WBVar00012359
WBVar00131978
WBVar00131979
WBVar00012364
WBVar00012369
WBVar00012374
WBVar00012379
WBVar00012329
WBVar00012334
WBVar00131956
WBVar00131957
WBVar00131954
WBVar00131955
WBVar00131960
WBVar00012339
WBVar00131961

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-pat-6, CCCGCTGTACCATTTCAATTTGCAAGTTCATGGACACGAGGAGAAGGTCAAGAATGTGCA, WBGene00041085   Expr1051503 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region