WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040542 Gene Name  Cbr-lag-2
Sequence Name  ? CBG21862 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable Notch binding activity. Predicted to be involved in Notch signaling pathway and cell fate specification. Predicted to be located in membrane. Is an ortholog of C. elegans lag-2. In C. elegans, lag-2 is involved in several processes, including maintenance of dauer; regulation of basement membrane organization; and regulation of cell population proliferation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21862.1 CBG21862.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21862 CBG21862   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00130561
WBVar00130563
WBVar00130562
WBVar00130565
WBVar00130564
WBVar00130567
WBVar00130566
WBVar00130569
WBVar00013349
WBVar00130568
WBVar00130571
WBVar00130570
WBVar00130573
WBVar00130572
WBVar00130575
WBVar00130574
WBVar00130577
WBVar00130576
WBVar00130578

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lag-2, GTCAAGAAGGTTGATGAGGAGGAGATTCGATACACCAGCGCTCCAAGGAACAACGAGTAT, WBGene00040542   Expr1060409 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  located_in
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region