WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040309 Gene Name  Cbr-tra-3
Sequence Name  ? CBG21580 Brief Description  Cbr-tra-3 encodes a calpain-like protease orthologous to C. elegans TRA-3; like in C. elegans, mutations in Cbr-tra-3 result in sexual cell fate transformations of XX hermaphrodites, resulting in one-armed gonads that only makes sperm, abnormal male tails with reduced sensory rays and spicules, and a protruding vulva phenotype.
Organism  Caenorhabditis briggsae Automated Description  Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans tra-3. In C. elegans, tra-3 is involved in proteolysis and sex determination.
Biotype  SO:0001217 Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21580.1 CBG21580.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21580 CBG21580   [unknown]

0 RNAi Result

2 Allele

Public Name
ed24
nm65

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tra-3, ACAAATCGTGTTCTCCGAGTGGACTACAAATGGAAAAAAGAGTGGAGCACCGGATGATCG, WBGene00040309   Expr1054951 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region