WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040133 Gene Name  Cbr-prp-19
Sequence Name  ? CBG21324 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in mRNA splicing, via spliceosome and protein ubiquitination. Predicted to be part of Prp19 complex. Is an ortholog of C. elegans prp-19. In C. elegans, prp-19 is involved in nuclear mRNA surveillance. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21324.1 CBG21324.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21324 CBG21324   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG21324, GAATTGGAGGCCAGAAAGTTCAAGTGCTGCATGTGAAGAGCTGGAGTGAAGTCGCCTCGC, WBGene00040133   Expr1059133 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of
  enables
  enables
  involved_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region