WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040017 Gene Name  Cbr-prmt-5
Sequence Name  ? CBG21172 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable methyltransferase activity. Predicted to be involved in peptidyl-arginine N-methylation. Is an ortholog of C. elegans prmt-5. In C. elegans, prmt-5 is involved in several processes, including intrinsic apoptotic signaling pathway in response to DNA damage; negative regulation of DNA damage response, signal transduction by p53 class mediator; and response to odorant. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21172b.1 CBG21172b.1   [unknown]
Transcript:CBG21172a.1 CBG21172a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21172a CBG21172a   [unknown]
CDS:CBG21172b CBG21172b   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00129461
WBVar00129463
WBVar00129462
WBVar00129465
WBVar00129464
WBVar00129466

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-prmt-5, GAAATCGCCCGAAAAATGAACTATCACCAGCCGGATCTCATCGTCTCCGAGTTGCTCGGA, WBGene00040017   Expr1062582 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region