WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039968 Gene Name  CBG21104
Sequence Name  ? CBG21104 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable gamma-glutamylaminecyclotransferase activity. Is an ortholog of C. elegans F42A10.9. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21104.1 CBG21104.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21104 CBG21104   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00129279
WBVar00129294
WBVar00129295
WBVar00129290
WBVar00129291
WBVar00129293
WBVar00129283
WBVar00129284
WBVar00129285
WBVar00129286
WBVar00129280
WBVar00129281
WBVar00129282
WBVar00129287
WBVar00129288
WBVar00129289

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG21104, AACCACCATGGAAAAGTTCCCCCTGGTCGTCGGAACCAAATTCAACATTCCATTCCTTTT, WBGene00039968   Expr1056401 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG21102, GCGGATCTTCTTGCCACGTCATCAGTCATGTTGACGACCTACTCAAGTCTTGGACCACAT, WBGene00039966   Expr1067593 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region