WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039967 Gene Name  Cbr-efk-1
Sequence Name  ? CBG21103 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calmodulin binding activity; elongation factor-2 kinase activity; and small molecule binding activity. Predicted to be involved in protein phosphorylation. Is an ortholog of C. elegans efk-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21103.1 CBG21103.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21103 CBG21103   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00129279
WBVar00129294
WBVar00129295
WBVar00129290
WBVar00129291
WBVar00129293
WBVar00129283
WBVar00129284
WBVar00129285
WBVar00129286
WBVar00129280
WBVar00129281
WBVar00129282
WBVar00129287
WBVar00129288
WBVar00129289

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-efk-1, AATGGCTGAAATGTACAAAGAAGGAGGATACGGGCTGAATCGAGACTTCGAACGAGCCTA, WBGene00039967   Expr1069058 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region