WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039794 Gene Name  Cbr-pde-3
Sequence Name  ? CBG20885 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in signal transduction. Is an ortholog of C. elegans pde-3. In C. elegans, pde-3 is involved in several processes, including determination of adult lifespan; negative regulation of cGMP-mediated signaling; and response to alkaline pH. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20885c.1 CBG20885c.1   [unknown]
Transcript:CBG20885d.1 CBG20885d.1   [unknown]
Transcript:CBG20885e.1 CBG20885e.1   [unknown]
Transcript:CBG20885a.1 CBG20885a.1   [unknown]
Transcript:CBG20885b.1 CBG20885b.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20885d CBG20885d   [unknown]
CDS:CBG20885c CBG20885c   [unknown]
CDS:CBG20885e CBG20885e   [unknown]
CDS:CBG20885b CBG20885b   [unknown]
CDS:CBG20885a CBG20885a   [unknown]

0 RNAi Result

38 Allele

Public Name
WBVar00139417
WBVar00139415
WBVar00139416
WBVar00139403
WBVar00139406
WBVar00139407
WBVar00139404
WBVar00139405
WBVar00139408
WBVar00139409
WBVar00139410
WBVar00139413
WBVar00139414
WBVar00139411
WBVar00139412
WBVar00129130
WBVar00129131
WBVar00129132
WBVar00129133
WBVar00129120
WBVar00129121
WBVar00129126
WBVar00129127
WBVar00129128
WBVar00129129
WBVar00129122
WBVar00129123
WBVar00129124
WBVar00129125
WBVar00129119

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-pde-3, CCAATTCTTCCTGGTCTCGAAACCTCCGAGCTTATGATCAATATGCAGCATAATCACAGA, WBGene00039794   Expr1050337 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG20887, AGTGAATATGGGTTACCATCAGTGATAGAGAACCCATATGGTGGCGAATCAATGGTTATT, WBGene00039795   Expr1058075 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region