WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039750 Gene Name  Cbr-xrn-1
Sequence Name  ? CBG20837 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable 5'-3' exonuclease activity and nucleic acid binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process. Is an ortholog of C. elegans xrn-1. In C. elegans, xrn-1 is involved in determination of adult lifespan and negative regulation of cytoplasmic mRNA processing body assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20837.1 CBG20837.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20837 CBG20837   [unknown]

0 RNAi Result

1 Allele

Public Name
cbp40304

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-xrn-1, GTCGTCCGAACTATCGAAATCAGCCACCCAAAGTGACGATGATCACTAAGCGAAAGTCGC, WBGene00039750   Expr1058110 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region