WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039691 Gene Name  Cbr-nep-17
Sequence Name  ? CBG20766 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable metalloendopeptidase activity. Predicted to be involved in proteolysis. Is an ortholog of C. elegans nep-17. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20766c.1 CBG20766c.1   [unknown]
Transcript:CBG20766b.1 CBG20766b.1   [unknown]
Transcript:CBG20766a.1 CBG20766a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20766a CBG20766a   [unknown]
CDS:CBG20766b CBG20766b   [unknown]
CDS:CBG20766c CBG20766c   [unknown]

0 RNAi Result

17 Allele

Public Name
WBVar00139359
WBVar00139361
WBVar00139362
WBVar00139360
WBVar00139365
WBVar00139363
WBVar00139364
WBVar00029722
WBVar00029727
WBVar00029732
WBVar00029737
WBVar00029707
WBVar00029742
WBVar00029712
WBVar00029747
WBVar00029717
WBVar00029752

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20766, CTGTCCATTGGGATCGAACAGTGCTCCAAAGCAGCACTGTGAAGTCTGGGTTCCAAAAAA, WBGene00039691   Expr1052908 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region