WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039524 Gene Name  Cbr-mig-6
Sequence Name  ? CBG20566 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable serine-type endopeptidase inhibitor activity. Predicted to be involved in extracellular matrix organization. Is an ortholog of C. elegans mig-6. In C. elegans, mig-6 is involved in several processes, including anatomical structure morphogenesis; distal tip cell migration; and nematode larval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20566b.1 CBG20566b.1   [unknown]
Transcript:CBG20566a.1 CBG20566a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20566a CBG20566a   [unknown]
CDS:CBG20566b CBG20566b   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00128836
WBVar00128835
WBVar00128834
WBVar00128833
WBVar00128838
WBVar00128837
WBVar00128832
WBVar00128831
WBVar00128830
WBVar00128825
WBVar00128824
WBVar00128823
WBVar00128822
WBVar00128829
WBVar00128828
WBVar00128827
WBVar00128826
WBVar00128821
WBVar00128820

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mig-6, AGGGAAATGCAAATAGATTCGATTCAGAATTGGACTGCTTCCGTCAATGCTCTAGCGTGA, WBGene00039524   Expr1054987 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region