WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039261 Gene Name  Cbr-scp-1
Sequence Name  ? CBG20225 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable sterol binding activity. Predicted to be involved in SREBP signaling pathway. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Is an ortholog of C. elegans scp-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20225.1 CBG20225.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20225 CBG20225   [unknown]

0 RNAi Result

27 Allele

Public Name
WBVar00050844
WBVar00050849
WBVar00050834
WBVar00050839
WBVar00050854
WBVar00050859
WBVar00019964
WBVar00019959
WBVar00019954
WBVar00019949
WBVar00019984
WBVar00019979
WBVar00019974
WBVar00019969
WBVar00128338
WBVar00128333
WBVar00128332
WBVar00128331
WBVar00128337
WBVar00128336
WBVar00128335
WBVar00128334
WBVar00028667
WBVar00028672
WBVar00028652
WBVar00028657
WBVar00028662

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-scp-1, CACGGCTTCATCGGATTCCGTCACTTTTTGGGATCTCAAGCATCGAGCGATTATTGGAAA, WBGene00039261   Expr1063689 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  located_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  located_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region