WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039233 Gene Name  Cbr-unc-103
Sequence Name  ? CBG20190 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-103. In C. elegans, unc-103 is involved in mating behavior and regulation of muscle contraction. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

9 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20190c.1 CBG20190c.1   [unknown]
Transcript:CBG20190b.1 CBG20190b.1   [unknown]
Transcript:CBG20190e.1 CBG20190e.1   [unknown]
Transcript:CBG20190d.1 CBG20190d.1   [unknown]
Transcript:CBG20190g.1 CBG20190g.1   [unknown]
Transcript:CBG20190f.1 CBG20190f.1   [unknown]
Transcript:CBG20190i.1 CBG20190i.1   [unknown]
Transcript:CBG20190h.1 CBG20190h.1   [unknown]
Transcript:CBG20190a.1 CBG20190a.1   [unknown]
 

Other

9 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20190d CBG20190d   [unknown]
CDS:CBG20190e CBG20190e   [unknown]
CDS:CBG20190b CBG20190b   [unknown]
CDS:CBG20190c CBG20190c   [unknown]
CDS:CBG20190h CBG20190h   [unknown]
CDS:CBG20190i CBG20190i   [unknown]
CDS:CBG20190f CBG20190f   [unknown]
CDS:CBG20190g CBG20190g   [unknown]
CDS:CBG20190a CBG20190a   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00139146
WBVar00139149
WBVar00139147
WBVar00139148
WBVar00049414
WBVar00049419
WBVar00049434
WBVar00049424
WBVar00049429
WBVar00049439

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20185, GAGTGGAAGTGGTAGCTGTGATCGAGGAGGAGGCGGAGGACCGAATGCGTCATCTGGAGC, WBGene00039231   Expr1063606 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG26024, AAATTTCATTCTGGAGACGATGTAGACAGTGAAGACGACGATGTGGAGGAGCAAGAGAAT, WBGene00087438   Expr1069834 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-unc-103.2, CGAAGATATGAGAGTATCCAGATTATCTTCCCACGAACCTCCGACGCCTACTCAGGAATC, WBGene00039233   Expr1066110 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  located_in
  enables
  enables
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region