WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039055 Gene Name  Cbr-unc-5
Sequence Name  ? CBG19929 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable netrin receptor activity. Predicted to be involved in netrin-activated signaling pathway. Predicted to be located in membrane. Is an ortholog of C. elegans unc-5. In C. elegans, unc-5 is involved in several processes, including axon guidance; regulation of neuron projection development; and sex differentiation. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19929b.1 CBG19929b.1   [unknown]
Transcript:CBG19929a.1 CBG19929a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19929b CBG19929b   [unknown]
CDS:CBG19929a CBG19929a   [unknown]

0 RNAi Result

25 Allele

Public Name
WBVar00139053
WBVar00011259
WBVar00011254
WBVar00011264
WBVar00127901
WBVar00127905
WBVar00127904
WBVar00127903
WBVar00127902
WBVar00127909
WBVar00127908
WBVar00127907
WBVar00127906
WBVar00127921
WBVar00127920
WBVar00127912
WBVar00127911
WBVar00127910
WBVar00127916
WBVar00127915
WBVar00127914
WBVar00127913
WBVar00127919
WBVar00127918
WBVar00127917

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-5, GACGCTGTGATGGTTCTAGAAAGATTCTTGTCAGCTTTCCCGCAAATTATTTCTCCCTAG, WBGene00039055   Expr1056453 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region