WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038895 Gene Name  Cbr-dog-1
Sequence Name  ? CBG19723 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable several functions, including ATP binding activity; DNA helicase activity; and hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides. Predicted to be involved in nucleobase-containing compound metabolic process. Is an ortholog of C. elegans dog-1. In C. elegans, dog-1 is involved in DNA metabolic process and regulation of DNA-templated DNA replication. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19723.1 CBG19723.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19723 CBG19723   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00027547
WBVar00027517
WBVar00027552
WBVar00027522
WBVar00027557
WBVar00027527
WBVar00027497
WBVar00027562
WBVar00027532
WBVar00027502
WBVar00027537
WBVar00027507
WBVar00027542
WBVar00027512

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-dog-1, GGATTCGTGCTCAACTGAAGAGCTATCCGAGTTTCAGACAATTCAATGCCAACTTCAGAG, WBGene00038895   Expr1050396 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  enables
  involved_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region