WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038880 Gene Name  Cbr-smp-1
Sequence Name  ? CBG19706 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable semaphorin receptor binding activity. Is an ortholog of C. elegans smp-1. In C. elegans, smp-1 is involved in nematode male tail mating organ morphogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19706a.1 CBG19706a.1   [unknown]
Transcript:CBG19706b.1 CBG19706b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19706a CBG19706a   [unknown]
CDS:CBG19706b CBG19706b   [unknown]

0 RNAi Result

29 Allele

Public Name
WBVar00000939
WBVar00000949
WBVar00000944
WBVar00000979
WBVar00000974
WBVar00000989
WBVar00000984
WBVar00000959
WBVar00000954
WBVar00000969
WBVar00000964
WBVar00000994
WBVar00127690
WBVar00127689
WBVar00127684
WBVar00127683
WBVar00127682
WBVar00127688
WBVar00127687
WBVar00127686
WBVar00127685
WBVar00027467
WBVar00027472
WBVar00027477
WBVar00027482
WBVar00027487
WBVar00027492
WBVar00028134
WBVar00028139

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-smp-1, CGGAATCAACACCCCATCTCGGGATAAGAACGCCATTGTCACCTCAATCAATCAGAATAC, WBGene00038880   Expr1069383 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region