WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038834 Gene Name  CBG19656
Sequence Name  ? CBG19656 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable pre-mRNA 5'-splice site binding activity and zinc ion binding activity. Predicted to be involved in mRNA 5'-splice site recognition. Predicted to be part of U1 snRNP. Is an ortholog of C. elegans snrp-3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19656.1 CBG19656.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19656 CBG19656   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00019624
WBVar00019619
WBVar00127651
WBVar00127650
WBVar00127653
WBVar00127652
WBVar00127648
WBVar00127647
WBVar00127649

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19656, AATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCC, WBGene00038834   Expr1057018 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of
  enables
  enables
  enables

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  part_of
  enables
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region