WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038510 Gene Name  Cbr-coq-6
Sequence Name  ? CBG19254 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable 4-hydroxy-3-all-trans-polyprenylbenzoate oxygenase activity and FAD binding activity. Predicted to be involved in ubiquinone biosynthetic process. Is an ortholog of C. elegans coq-6. In C. elegans, coq-6 is involved in ubiquinone biosynthetic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19254.1 CBG19254.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19254 CBG19254   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00025834
WBVar00025854
WBVar00025839
WBVar00025824
WBVar00025859
WBVar00025844
WBVar00025829
WBVar00025849

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-coq-6, TGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGA, WBGene00038510   Expr1062841 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables
  enables

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region