WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038328 Gene Name  Cbr-mec-1
Sequence Name  ? CBG19048 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity and serine-type endopeptidase inhibitor activity. Is an ortholog of C. elegans mec-1. In C. elegans, mec-1 is involved in detection of mechanical stimulus involved in sensory perception of touch; extracellular structure organization; and mechanosensory behavior. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19048a.1 CBG19048a.1   [unknown]
Transcript:CBG19048b.1 CBG19048b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19048b CBG19048b   [unknown]
CDS:CBG19048a CBG19048a   [unknown]

0 RNAi Result

45 Allele

Public Name
WBVar00127181
WBVar00127180
WBVar00127183
WBVar00127182
WBVar00127152
WBVar00127151
WBVar00127150
WBVar00127156
WBVar00127155
WBVar00127154
WBVar00127153
WBVar00127159
WBVar00127158
WBVar00127157
WBVar00127141
WBVar00127140
WBVar00127145
WBVar00127144
WBVar00127143
WBVar00127142
WBVar00127149
WBVar00127148
WBVar00127147
WBVar00127146
WBVar00127139
WBVar00127170
WBVar00127174
WBVar00127173
WBVar00127172
WBVar00127171

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-mec-1, ATGGTTTATCCGGACGAATTCAGCGAAAAAATGAGACGATTGCTGCAATTCTCGTGTTGC, WBGene00038328   Expr1057481 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region