WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038321 Gene Name  Cbr-unc-70
Sequence Name  ? CBG19038 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable actin binding activity and phospholipid binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be part of spectrin. Is an ortholog of C. elegans unc-70. In C. elegans, unc-70 is involved in several processes, including dendrite development; embryonic body morphogenesis; and muscle cell cellular homeostasis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19038e.1 CBG19038e.1   [unknown]
Transcript:CBG19038d.1 CBG19038d.1   [unknown]
Transcript:CBG19038a.1 CBG19038a.1   [unknown]
Transcript:CBG19038c.1 CBG19038c.1   [unknown]
Transcript:CBG19038b.1 CBG19038b.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19038d CBG19038d   [unknown]
CDS:CBG19038c CBG19038c   [unknown]
CDS:CBG19038b CBG19038b   [unknown]
CDS:CBG19038a CBG19038a   [unknown]
CDS:CBG19038e CBG19038e   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-70, CGTTCGAGAAATCTGCACTCGCACAAGAAGAACGATTCTTGGCACTCGAGAAGTTGACAA, WBGene00038321   Expr1060039 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

4 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  part_of

0 Homologues

0 Locations

4 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region