WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037974 Gene Name  Cbr-lgc-31
Sequence Name  ? CBG18584 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-31. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG18584a.1 CBG18584a.1   [unknown]
Transcript:CBG18584b.1 CBG18584b.1   [unknown]
Transcript:CBG18584c.1 CBG18584c.1   [unknown]
Transcript:CBG18584d.1 CBG18584d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG18584d CBG18584d   [unknown]
CDS:CBG18584c CBG18584c   [unknown]
CDS:CBG18584b CBG18584b   [unknown]
CDS:CBG18584a CBG18584a   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00042634
WBVar00042639
WBVar00014269
WBVar00014274
WBVar00014264
WBVar00014279
WBVar00014284
WBVar00126598
WBVar00126599
WBVar00025282

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG18582, AAAAGAGCATTCGGACGGAACGATTATTTGTTACCCGAAAATTTCAAGACGCTCCGGCGA, WBGene00037972   Expr1054135 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-lgc-31, GAAATGATGACGCTGATCCCTCAGGAAGACATCAATACCAAATGGCAAGCTGTGATTCGG, WBGene00037974   Expr1065577 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

6 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region