WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037971 Gene Name  CBG18580
Sequence Name  ? CBG18580 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be located in membrane. Is an ortholog of C. elegans C06B8.7. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG18580.1 CBG18580.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG18580 CBG18580   [unknown]

0 RNAi Result

71 Allele

Public Name
WBVar00138809
WBVar00138808
WBVar00138812
WBVar00138813
WBVar00138810
WBVar00138811
WBVar00138816
WBVar00138817
WBVar00138814
WBVar00138815
WBVar00138818
WBVar00138819
WBVar00138820
WBVar00138823
WBVar00138824
WBVar00138821
WBVar00138822
WBVar00138827
WBVar00138828
WBVar00138825
WBVar00138826
WBVar00138829
WBVar00138830
WBVar00138831
WBVar00138832
WBVar00138833
WBVar00042619
WBVar00042624
WBVar00042629
WBVar00126565

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG18580, TCACTTCGTTGAACTACACGCTCCGCCTCGAACAGGAGGATCTCTAAAATCCAAAAAACC, WBGene00037971   Expr1059235 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  located_in

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region