WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037805 Gene Name  Cbr-unc-49
Sequence Name  ? CBG18364 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable GABA-A receptor activity and extracellular ligand-gated monoatomic ion channel activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-49. In C. elegans, unc-49 is involved in gamma-aminobutyric acid signaling pathway; locomotory behavior; and regulation of backward locomotion. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG18364b.1 CBG18364b.1   [unknown]
Transcript:CBG18364a.1 CBG18364a.1   [unknown]
Transcript:CBG18364d.1 CBG18364d.1   [unknown]
Transcript:CBG18364c.3 CBG18364c.3   [unknown]
Transcript:CBG18364c.2 CBG18364c.2   [unknown]
Transcript:CBG18364c.1 CBG18364c.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG18364d CBG18364d   [unknown]
CDS:CBG18364c CBG18364c   [unknown]
CDS:CBG18364b CBG18364b   [unknown]
CDS:CBG18364a CBG18364a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-49, TGCTATCTTTTAGTGATTCTTGCGTTGATTGAATACGCGTGTGTTGCATACTCCAAAAAG, WBGene00037805   Expr1057489 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG18365, AGTCTAAACTCATCGGACAAGATCCAGGAAAACGACAAGTGGCAGCACATCCACTGGTGA, WBGene00037806   Expr1067445 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region