WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037520 Gene Name  Cbr-cdka-1
Sequence Name  ? CBG18023 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity. Predicted to be part of protein kinase 5 complex. Is an ortholog of C. elegans cdka-1. In C. elegans, cdka-1 is involved in GABAergic synaptic transmission; regulation of cellular localization; and synaptic vesicle transport. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG18023a.1 CBG18023a.1   [unknown]
Transcript:CBG18023b.1 CBG18023b.1   [unknown]
Transcript:CBG18023c.1 CBG18023c.1   [unknown]
Transcript:CBG18023d.1 CBG18023d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG18023c CBG18023c   [unknown]
CDS:CBG18023b CBG18023b   [unknown]
CDS:CBG18023d CBG18023d   [unknown]
CDS:CBG18023a CBG18023a   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cdka-1, GAAGAGCTACACGCATGGATTTTGAGCTGTTTGTATGTTTCTTACTCGTATATGGGTAAC, WBGene00037520   Expr1054338 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region