WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037171 Gene Name  Cbr-plc-1
Sequence Name  ? CBG17587 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable guanyl-nucleotide exchange factor activity and phosphatidylinositol-4,5-bisphosphate phospholipase C activity. Predicted to be involved in lipid metabolic process and small GTPase-mediated signal transduction. Is an ortholog of C. elegans plc-1. In C. elegans, plc-1 is involved in several processes, including 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process; defense response to Gram-positive bacterium; and positive regulation of protein import into nucleus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17587c.1 CBG17587c.1   [unknown]
Transcript:CBG17587b.1 CBG17587b.1   [unknown]
Transcript:CBG17587a.1 CBG17587a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17587a CBG17587a   [unknown]
CDS:CBG17587c CBG17587c   [unknown]
CDS:CBG17587b CBG17587b   [unknown]

0 RNAi Result

66 Allele

Public Name
WBVar00042349
WBVar00042359
WBVar00042354
WBVar00042364
WBVar00042369
WBVar00042374
WBVar00042379
WBVar00042394
WBVar00042384
WBVar00042389
WBVar00042399
WBVar00013939
WBVar00013934
WBVar00013929
WBVar00013924
WBVar00013919
WBVar00013914
WBVar00013909
WBVar00013904
WBVar00013979
WBVar00013974
WBVar00013969
WBVar00013964
WBVar00013959
WBVar00013954
WBVar00013949
WBVar00013944
WBVar00013989
WBVar00013984
WBVar00013899

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-plc-1, CGTGCTCGAGAACCGAAAGGATACTGTACACGCGACACTCGAAAAAGTGAGATCATTTAT, WBGene00037171   Expr1062309 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG17582, AGAATCTGCCAGGAGGAAGTCGTTGGTCTCACTTCAACTTCATCGCAAATCCAGAAATGT, WBGene00037167   Expr1052744 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-frm-9, CGCCGCATTTGGTTGTAAAGTTTTTCAAGTCAAAGAGTTGCTACACGGACGAACACTTCG, WBGene00037170   Expr1053931 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

7 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in

0 Homologues

0 Locations

7 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  involved_in
  involved_in
  involved_in
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region