WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037147 Gene Name  Cbr-dgn-1
Sequence Name  ? CBG17551 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be part of dystrophin-associated glycoprotein complex. Is an ortholog of C. elegans dgn-1. In C. elegans, dgn-1 is involved in anatomical structure morphogenesis; inductive cell migration; and positive regulation of locomotion. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17551.1 CBG17551.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17551 CBG17551   [unknown]

0 RNAi Result

32 Allele

Public Name
WBVar00042299
WBVar00042294
WBVar00013819
WBVar00013814
WBVar00013809
WBVar00013804
WBVar00013829
WBVar00013824
WBVar00013799
WBVar00013789
WBVar00013784
WBVar00013794
WBVar00013779
WBVar00013774
WBVar00013769
WBVar00013764
WBVar00013759
WBVar00013754
WBVar00013749
WBVar00013744
WBVar00125560
WBVar00125561
WBVar00125562
WBVar00125563
WBVar00125557
WBVar00125558
WBVar00125555
WBVar00125556
WBVar00125559
WBVar00125553

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-dgn-1, AAGAGCGGAAAAAAGAAGTCTCCAAGCACGGAGTACGTCTCCAAGGGACTTCCAGTTGTC, WBGene00037147   Expr1056526 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  enables
  located_in
  part_of

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  enables
  located_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region