WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00037064 Gene Name  Cbr-gar-2
Sequence Name  ? CBG17450 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable G protein-coupled acetylcholine receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Is an ortholog of C. elegans gar-2. In C. elegans, gar-2 is involved in G protein-coupled receptor signaling pathway; negative regulation of cholinergic synaptic transmission; and response to xenobiotic stimulus. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17450c.1 CBG17450c.1   [unknown]
Transcript:CBG17450b.1 CBG17450b.1   [unknown]
Transcript:CBG17450a.1 CBG17450a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17450b CBG17450b   [unknown]
CDS:CBG17450a CBG17450a   [unknown]
CDS:CBG17450c CBG17450c   [unknown]

0 RNAi Result

20 Allele

Public Name
WBVar00043717
WBVar00043722
WBVar00006869
WBVar00125391
WBVar00125392
WBVar00125390
WBVar00125395
WBVar00125396
WBVar00125393
WBVar00125394
WBVar00125397
WBVar00125381
WBVar00125384
WBVar00125385
WBVar00125382
WBVar00125383
WBVar00125388
WBVar00125389
WBVar00125386
WBVar00125387

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gar-2, TCAATACATTATATACGATTTCCTATTATCTGTGTTATATGAACTCCCCGTTGAATCCAT, WBGene00037064   Expr1067908 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  located_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region