WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036999 Gene Name  Cbr-slo-2
Sequence Name  ? CBG17348 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in potassium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans slo-2. In C. elegans, slo-2 is involved in positive regulation of neurotransmitter secretion and potassium ion transport. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17348a.1 CBG17348a.1   [unknown]
Transcript:CBG17348c.1 CBG17348c.1   [unknown]
Transcript:CBG17348b.1 CBG17348b.1   [unknown]
Transcript:CBG17348d.1 CBG17348d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17348a CBG17348a   [unknown]
CDS:CBG17348b CBG17348b   [unknown]
CDS:CBG17348c CBG17348c   [unknown]
CDS:CBG17348d CBG17348d   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00138590
WBVar00138587
WBVar00138586
WBVar00138589
WBVar00138588
WBVar00012829
WBVar00125292
WBVar00125293
WBVar00125290
WBVar00125291
WBVar00125296
WBVar00125294
WBVar00125295
WBVar00125285
WBVar00125286
WBVar00125284
WBVar00125289
WBVar00125287
WBVar00125288

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-slo-2, AAAATCAGCAATCTCTTACGTCATCATCAATCCGGCTCAAGACCTAGAGTTGGAATCTGG, WBGene00036999   Expr1066332 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG17346, ATCATTCGATGATTTCAAGCAATCCATCAGTCACATCACCGAAATTTTTCGGACAGATCC, WBGene00036998   Expr1054540 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  located_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region