WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036967 Gene Name  Cbr-frm-3
Sequence Name  ? CBG17296 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable cytoskeletal protein binding activity and guanyl-nucleotide exchange factor activity. Is an ortholog of C. elegans frm-3. In C. elegans, frm-3 is involved in gamma-aminobutyric acid receptor clustering. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG17296a.1 CBG17296a.1   [unknown]
Transcript:CBG17296b.1 CBG17296b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG17296a CBG17296a   [unknown]
CDS:CBG17296b CBG17296b   [unknown]

0 RNAi Result

15 Allele

Public Name
cbp40263
cbp40264
cbp40265
cbp40266
cbp40271
cbp40267
cbp40268
cbp40269
cbp40270
cbp40274
cbp40275
cbp40276
cbp40277
cbp40272
cbp40273

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-frm-3, AAAACCACGCCTCACAATCAGTCGATATCCTCTTTCATGTCTCAAAAATCACGGCGGGAT, WBGene00036967   Expr1054696 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG17295, TTCTTCCGGAAGAATCTCCTGTTTCAAAAATGAGCCCTCTTCAAATATGTTGGTACCGAA, WBGene00036966   Expr1051064 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  enables

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region