Genomics
3 Transcripts
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| Transcript:CBG16954a.1 | CBG16954a.1 | [unknown] | |
| Transcript:CBG16954c.1 | CBG16954c.1 | [unknown] | |
| Transcript:CBG16954b.1 | CBG16954b.1 | [unknown] |
Other
3 CDSs
| WormMine ID | Sequence Name | Length (nt) | Chromosome Location |
|---|---|---|---|
| CDS:CBG16954c | CBG16954c | [unknown] | |
| CDS:CBG16954b | CBG16954b | [unknown] | |
| CDS:CBG16954a | CBG16954a | [unknown] |
29 Allele
| Public Name |
|---|
| WBVar00138419 |
| WBVar00138420 |
| WBVar00138422 |
| WBVar00138421 |
| WBVar00138424 |
| WBVar00138423 |
| WBVar00001869 |
| WBVar00001879 |
| WBVar00001874 |
| WBVar00124413 |
| WBVar00124414 |
| WBVar00124411 |
| WBVar00124412 |
| WBVar00124415 |
| WBVar00124410 |
| WBVar00124408 |
| WBVar00124409 |
| WBVar00028794 |
| WBVar00028799 |
| WBVar00028804 |
| WBVar00021767 |
| WBVar00028809 |
| WBVar00021772 |
| WBVar00021777 |
| WBVar00021782 |
| WBVar00021787 |
| WBVar00028779 |
| WBVar00028784 |
| WBVar00028789 |
2 Expression Clusters
| Regulated By Treatment | Description | Algorithm | Primary Identifier |
|---|---|---|---|
| Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day9_vs_Day6_upregulated | |
| Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. | DESeq2, p < 0.01, fold change > 2. | WBPaper00068053:CBG_Day6_vs_Day1_downregulated |
4 Expression Patterns
| Remark | Reporter Gene | Primary Identifier | Pattern | Subcellular Localization |
|---|---|---|---|---|
| CBG16951, CAACTCGAATGATCATAATAACTCGAATCATCGAATGGTCATTGAGGATGTCACTGATGA, WBGene00036741 | Expr1067429 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG16953, ACGGATACCTAGTGGAAAAGGAACATCAAATCAGACGCCAGGAGTGGTGAAGACGGATTT, WBGene00036742 | Expr1067193 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| CBG16950, TCTATGCTCGTGTTATTCGAAAAATACAGAAGTTGTGGAAGTTTACGAAGGAGACAATGG, WBGene00036740 | Expr1054060 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 | ||
| Cbr-lim-9, ACAGTGACCACTTTTGCTGTTGGCAATGCGATCAAACATTGACTGGACAGCGATATATAA, WBGene00036743 | Expr1063677 | Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012 |
