WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036728 Gene Name  Cbr-tat-5
Sequence Name  ? CBG16933 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable ATP hydrolysis activity; ATPase-coupled intramembrane lipid transporter activity; and small molecule binding activity. Predicted to be involved in phospholipid transport. Predicted to be located in membrane. Is an ortholog of C. elegans tat-5. In C. elegans, tat-5 is involved in embryo development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16933b.1 CBG16933b.1   [unknown]
Transcript:CBG16933a.1 CBG16933a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16933a CBG16933a   [unknown]
CDS:CBG16933b CBG16933b   [unknown]

0 RNAi Result

25 Allele

Public Name
WBVar00001809
WBVar00001804
WBVar00001819
WBVar00001814
WBVar00001749
WBVar00001744
WBVar00001759
WBVar00001754
WBVar00001739
WBVar00001789
WBVar00001784
WBVar00001799
WBVar00001794
WBVar00001769
WBVar00001764
WBVar00001779
WBVar00001774
WBVar00124400
WBVar00124401
WBVar00124399
WBVar00028744
WBVar00028749
WBVar00028754
WBVar00028759
WBVar00028764

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tat-5, TTCATTCATGTCGTTTCGATTTCGTTCTCGGCGCTGATTGTTACCGAATTGATTATGGTT, WBGene00036728   Expr1062945 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

8 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Homologues

0 Locations

8 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
  enables
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region