WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036678 Gene Name  Cbr-tnt-3
Sequence Name  ? CBG16852 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in regulation of muscle contraction. Predicted to be part of troponin complex. Is an ortholog of C. elegans tnt-3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16852a.1 CBG16852a.1   [unknown]
Transcript:CBG16852c.1 CBG16852c.1   [unknown]
Transcript:CBG16852b.1 CBG16852b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16852a CBG16852a   [unknown]
CDS:CBG16852c CBG16852c   [unknown]
CDS:CBG16852b CBG16852b   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00044499
WBVar00124347
WBVar00124348
WBVar00124345
WBVar00124346
WBVar00124349
WBVar00124343
WBVar00124344

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tnt-3, AAGAGCTCAACGAGCGTCAACGTCAAGTAACCCGCAACTCCGCTCTCAAGAAGGGCATTG, WBGene00036678   Expr1057936 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  involved_in
  part_of

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  part_of

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region