WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036627 Gene Name  Cbr-deg-1
Sequence Name  ? CBG16785 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable sodium channel activity. Predicted to be involved in sodium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans deg-1. In C. elegans, deg-1 is involved in response to acidic pH and response to amino acid. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16785e.1 CBG16785e.1   [unknown]
Transcript:CBG16785c.1 CBG16785c.1   [unknown]
Transcript:CBG16785d.1 CBG16785d.1   [unknown]
Transcript:CBG16785f.1 CBG16785f.1   [unknown]
Transcript:CBG16785b.1 CBG16785b.1   [unknown]
Transcript:CBG16785a.1 CBG16785a.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16785c CBG16785c   [unknown]
CDS:CBG16785d CBG16785d   [unknown]
CDS:CBG16785e CBG16785e   [unknown]
CDS:CBG16785f CBG16785f   [unknown]
CDS:CBG16785a CBG16785a   [unknown]
CDS:CBG16785b CBG16785b   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00047959
WBVar00018074
WBVar00018079
WBVar00018069
WBVar00124314
WBVar00124315
WBVar00124312
WBVar00124313
WBVar00124316
WBVar00124310
WBVar00124311
WBVar00124303
WBVar00124304
WBVar00124302
WBVar00124307
WBVar00124308
WBVar00124305
WBVar00124306
WBVar00124309

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-deg-1, CGAGGGAATGACTGAAAACGAATGTGAACAGTACTACAGATTGAATGCGGCCATGATTGA, WBGene00036627   Expr1064236 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

5 GO Annotation

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  located_in

0 Homologues

0 Locations

5 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  involved_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region