WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036574 Gene Name  Cbr-gly-12
Sequence Name  ? CBG16700 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein glycosylation. Is an ortholog of C. elegans gly-12. In C. elegans, gly-12 is involved in protein N-linked glycosylation. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16700.2 CBG16700.2   [unknown]
Transcript:CBG16700.1 CBG16700.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16700 CBG16700   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00047879
WBVar00124266
WBVar00124267
WBVar00124270
WBVar00124271
WBVar00124272
WBVar00124268
WBVar00124269

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gly-12, GGAAAATGTGATCCGCACAGTCTCGAGATGATTGCGTTTTTCAAGCGGAAAGGATGGAAG, WBGene00036574   Expr1066126 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

2 GO Annotation

Annotation Extension Qualifier
  enables
  involved_in

0 Homologues

0 Locations

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  involved_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region