WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036477 Gene Name  Cbr-rbf-1
Sequence Name  ? CBG16576 Organism  Caenorhabditis briggsae
Automated Description  Predicted to be involved in exocytosis. Predicted to be located in membrane and synaptic vesicle. Is an ortholog of C. elegans rbf-1. In C. elegans, rbf-1 is involved in dense core granule exocytosis and positive regulation of locomotion. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

11 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16576a.1 CBG16576a.1   [unknown]
Transcript:CBG16576b.1 CBG16576b.1   [unknown]
Transcript:CBG16576c.1 CBG16576c.1   [unknown]
Transcript:CBG16576d.1 CBG16576d.1   [unknown]
Transcript:CBG16576e.1 CBG16576e.1   [unknown]
Transcript:CBG16576f.1 CBG16576f.1   [unknown]
Transcript:CBG16576g.1 CBG16576g.1   [unknown]
Transcript:CBG16576h.1 CBG16576h.1   [unknown]
Transcript:CBG16576i.1 CBG16576i.1   [unknown]
Transcript:CBG16576j.1 CBG16576j.1   [unknown]
Transcript:CBG16576k.1 CBG16576k.1   [unknown]
 

Other

11 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16576j CBG16576j   [unknown]
CDS:CBG16576i CBG16576i   [unknown]
CDS:CBG16576h CBG16576h   [unknown]
CDS:CBG16576g CBG16576g   [unknown]
CDS:CBG16576k CBG16576k   [unknown]
CDS:CBG16576b CBG16576b   [unknown]
CDS:CBG16576a CBG16576a   [unknown]
CDS:CBG16576f CBG16576f   [unknown]
CDS:CBG16576e CBG16576e   [unknown]
CDS:CBG16576d CBG16576d   [unknown]
CDS:CBG16576c CBG16576c   [unknown]

0 RNAi Result

0 Allele

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-rbf-1, AATGTATCGAAAATCCGGGAACTTTAGTTGAAGCGTGGCATCGTCTAGAATTGGATTCGT, WBGene00036477   Expr1050783 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16580, TTTTATGTTGGATCTACCTGTGGTTTCGACTAGATGTAAGTCTTGTTTGGAAAAAACTTC, WBGene00036478   Expr1053845 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

3 GO Annotation

Annotation Extension Qualifier
  located_in
  involved_in
  located_in

0 Homologues

0 Locations

3 Ontology Annotations

Annotation Extension Qualifier
  located_in
  involved_in
  located_in

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region