WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00036307 Gene Name  CBG16342
Sequence Name  ? CBG16342 Organism  Caenorhabditis briggsae
Automated Description  Predicted to enable calcium ion binding activity. Is an ortholog of C. elegans F43B10.1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG16342d.1 CBG16342d.1   [unknown]
Transcript:CBG16342c.1 CBG16342c.1   [unknown]
Transcript:CBG16342b.1 CBG16342b.1   [unknown]
Transcript:CBG16342a.1 CBG16342a.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG16342d CBG16342d   [unknown]
CDS:CBG16342b CBG16342b   [unknown]
CDS:CBG16342c CBG16342c   [unknown]
CDS:CBG16342a CBG16342a   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00056984
WBVar00055993
WBVar00055988
WBVar00055983
WBVar00123819
WBVar00123818
WBVar00024794
WBVar00024764
WBVar00024769
WBVar00024774
WBVar00024779
WBVar00021102
WBVar00024784
WBVar00024754
WBVar00024789
WBVar00024759

0 Chromosome

0 Chromosome Location

2 Data Sets

Name URL
WormBaseAcedbConverter  
GO Annotation data set  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG16340, TTAAAGACGAGAATGGATCACAACCAGTTATCACCACACCTCGGAAACTCTTGAATTTCG, WBGene00036305   Expr1067776 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16342, AAAGTCGTCACTTCGTGGAAGGTTCATCAACACATTTGTGAACTGGAGAAAGTTCTTCGC, WBGene00036307   Expr1059292 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG16341, AGGCACTCCGATTGTCCAACTCTCTACCACCACAGTCAAATACAACGAAAATGTACCAGT, WBGene00036306   Expr1068446 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

1 GO Annotation

Annotation Extension Qualifier
  enables

0 Homologues

0 Locations

1 Ontology Annotations

Annotation Extension Qualifier
  enables

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region